binWlzApp Directory Reference

Files
file	Wlz3DGetProjection.c
	Command line binary to project a Woolz object using a view transform.
file	Wlz3DGetSection.c
	Gets an arbitrary slice from a 3D object.
file	Wlz3DViewTransformBitmap.c
	Transform a bitmap on a section view to a 3D object.
file	Wlz3DViewTransformObj.c
	Transforms a section view to a 3D object.
file	WlzApplyTileFunction.c
	Apply a function for each tile to the associated image and output a vector of values.
file	WlzBibToMeshTrans.c
	Generates a mesh transform from an MAPaint bibfiile of basis function parameters and tie-points.
file	WlzBibTransAbsRel.c
	Reads a reconstruction bibfile and writes it back out with either absolute or relative transforms.
file	WlzCelCmpFeatures.c
	Extracts domains for clumps and cells within clumps both from within the given image. The cells and clumps are used to compute numerical features and these are output together with "colorised" images showing the segmentation.
file	WlzClassMap.c
	Generate a class image from a set of probability images, setting colours from a standard list.
file	WlzCreateRandomDomain.c
	Generate a set of random domains to cover a given model domain.
file	WlzDisplacement.c
	Computes displacement object.
file	WlzDisplacementToVtk.c
	Computes VTK visualisation of displacements.
file	WlzDomainAdjacencyMatrix.c
	Calculate the adjacency profiles for a given domain with respect to a set of domains. Each profile is output as a row in a matrix. The first row in the matrix indicates the adjacency distance.
file	WlzDomainMatch.c
	Calculate a similarity value for a pair or set of woolz domains. This has been developed for the purposes of analysing the EMAGE gene-expression data.
file	WlzDomainMatchMatrix.c
	Calculate a similarity value for a pair or set of woolz domains. This has been developed for the purposes of analysing the EMAGE gene-expression data.
file	WlzDomainOccupancy.c
	Computes the occupancy of a domain with respect to it's planes.
file	WlzDomainToTiles.c
	Cut a woolz domain object into tiles or chips of equal size. With the tiff-tile option the object is reset to origin (0,0) and each tile has origin (0,0) and the tiles are ordered in the tiff-tile sequence.
file	WlzDrawDomainObj.c
	Reads a string of drawing commands and from them draws a 3D domain object. All drawing commands are on a section plane which is defined by the view transform.
file	WlzEMAP.h [code]
	Special defines for the EMAP extension to the Woolz library.
file	WlzEMAPDomainTransform.c
	Apply a warp transform to an EMAP model domain to convert to a linked model.
file	WlzEMAPTransformUtils.c
	Utilities to transform between standard EMAP models.
file	WlzEuclidDistanceMap.c
	Calculate the Euclidean distance from the input vertex to all parts of the domain.
file	WlzExtractTransform.c
	Finds the affine transforms from a reconstruction bibfile.
file	WlzFixDomains.c
	Fixes flying pixels and small holes in domains.
file	WlzFixedPlaneAlign.c
	Reset the transforms in a bibfile so that fixed planes are fixed.
file	WlzIndexBoundaries.c
	Calculate the boundaries for a set of threshold levels.
file	WlzInterpolateSectionViewerBibFiles.c
	Automatically interpolates bib files.
file	WlzMatchICPPlane.c
	Compute tie points for a computed plane of section in a reference object and a 2D object, where these are read from an 'MAPaint 2D warp input parameters' bibfile.
file	WlzObjCompareSpecial_01.c
	Compares a pair of objects and prints some statistics.
file	WlzOccupancy.c
	Calculate the occupancy of each pixel with respect to a series of domains.
file	WlzPatchObjRegister.c
	Registers patch objects and outputs a single object.
file	WlzPosterProcessForStackupKeep3StraitLines.c
	Compute transforms to stack sections keeping verticals.
file	WlzProductTransform.c
	Computes the product transform for bibfiles.
file	WlzProjectDomain.c
	Projects a 3D domain onto a single section 3D projection as used for EMAGE wholemounts.
file	WlzRadialDistribution.c
	Outputs the radial distribution of components of the input image.
file	WlzRawToWlz.c
	Converts raw data to a Woolz object.
file	WlzReconstruct.c
	Reconstructs a 3D object using the information a Reconstruct bibfile.
file	WlzShellFilter3D.c
	Computes a new Woolz object by passing all planes of a 3D object through an external (shell) filter.
file	WlzSizeSelect.c
	Selects components of an object's domain on the basis of area.
file	WlzSplitImage.c
	Splits an object that is composed of several components seperated by background into seperate objects.
file	WlzSplitMontage.c
	Splits a montage object - one that is composed of several components separated by a gap.
file	WlzTiffStackToPatches.c
	Converts a TIFF stack to a compound object representing the set of patches or mosiac tiles.
file	WlzTiffStackToShade.c
	Converts a TIFF stack to a shade object.
file	WlzVTKTensor.c
	Converts a Woolz conforming mesh object with tensor values to a VTK polydata file with tensor dataset attributes.
file	WlzVtxDistance.c
	Calculate distance between two vertices.
file	WlzVtxToObj.c
	Builds a Woolz domain object from a vertex.